Bone chemistry and paleodiet

Bone chemistry paleodietary studies are emerging as important research areas in archaeology, biological anthropology, and paleontology. With appropriate controls, the inorganic and organic chemical composition of bones and teeth can provide information about past diet and habitat use. Chemical signatures are used to address individual dietary variability in early hominid fossils, paleontological remains, and more recent human and faunal populations.     

Origins of formation waters in the Llanos foreland basin of Colombia: geochemical variation and fluid flow history

Wells located in the Colombian Andean foreland often produce biodegraded hydrocarbons and relatively fresh water (total dissolved solids concentrations of 2000 mg l^?1 dominate across most of the basin). The ratio of water to hydrocarbon in the produced fluids is high and has often been interpreted by explorationists and simulation engineers as being due to massive meteoric water invasion. To challenge this hypothesis, previously published and existing data are compiled here, along with 68 new water samples collected from both the surface (rivers) and subsurface (production wells), which are analyzed for major elements, salinity, and stable isotope compositions. The data indicate a mixed origin for the water, which involves formation water, meteoric water, and a third source that we interpret as being related to diagenetic processes (such as clay dehydration). Analyses of the variation of the parameters from north to south and west to east allow us to define the mixtures as coming from waters of different origins and make it possible to determine the relative contribution of each source.     

Red calcite: an indicator of paleo‐karst systems associated with bauxitic unconformities

A unique red calcite generation, which fills fractures/cavities, is hosted by Mesozoic carbonates in the Transdanubian Range, Hungary. Solid inclusions are located along growth zones of calcite. Hematite, the most abundant solid inclusion, gives the red colour of it. Outcrop‐scale geometry, mineralogical features and detrital mineral assemblage (hematite, gibbsite, goethite, kaolinite, smectite, illite, Cr‐spinel, monazite, xenotime, zircon, apatite and Ti‐oxide) of calcite precipitates suggest strong correlation between the calcite and nearby karst bauxite deposits. Fluid inclusion petrography and microthermometry (T < 50°C; salinity from 0 to 0.17 NaCl eq. w%) of primary fluid inclusions, and the stable isotope trend of the calcite, following the meteoric water line, clearly indicate vadose and phreatic meteoric origin in a near‐surface karst system. The late Cretaceous to mid‐Eocene unconformity‐related cavity‐filling deposits occur close to the surface; indicating that the most recent Quaternary exhumation re‐exposed those surfaces that existed at the time of calcite mineralization. Thus, red calcite precipitates are interpreted as being speleothems, vestiges of the subterranean part of the pre‐Middle Eocene karst. The infiltrated, fine bauxite particles enclosed by the calcite are the witnesses of the once areally extensive pre‐Middle Eocene bauxitic blanket that became partially eroded by the time of the deposition of the cover beds. Red calcite when found in core samples may provide good evidence on bauxite formation associated with the overlying unconformity, even if it was later removed by erosion. Therefore, presence or absence of red calcite may be used as distinguishing criteria between karst episodes with or without bauxite formation.     

Lead isotope ratios: Tracking the migration of European‐Americans to Grafton,Illinois in the 19th century

Lead isotope analysis was conducted using inductively coupled plasma mass spectrometer (ICP‐MS) instruments on local soil samples and human premolar tooth enamel from a 19th century population from Grafton, Illinois, USA. The goal of the study was to determine if lead isotope analysis could be used to infer place of birth and patterns of 19th century migration into the city of Grafton. Five soil core samples from a location near Grafton, Illinois, five grave soil samples from the city cemetery and the tooth enamel of 19 human premolars were analysed. The results of the soil core analysis indicated that the lead isotopic signature of Grafton differs significantly from isotope ratios of other geographic areas associated with recorded places of birth of 19th century Jersey County residents. Elemental and isotope analysis of the soil samples indicated that diagenesis was not a factor in the analysis of lead isotopic signatures of enamel. From the lead isotope analysis of human premolars, the geographic origin of 13 of the remaining 15 individuals could be inferred. The inferred geographic origin was supplemented by an analysis of 1860 mortality and census records and demonstrated the utility of using lead isotope analysis in bio‐archaeological investigations. Copyright © 2010 John Wiley & Sons, Ltd.     

Assessing mussel shell diagenesis in the modern vadose zone at Lyon's Bluff (22OK520), Northeast Mississippi

This study considers the chemical alteration of archaeological freshwater shell above the water table at the Lyon's Bluff site (22OK520), a single-mound and village complex located in east-central Mississippi, and the changes in trace element concentrations between unfired and fired shell. Thin-section petrography, X-ray diffraction, cathodoluminescence, and scanning electron microscopy analyses were conducted on archaeological shell from four natural layers from Unit 20N20W, over a depth of 80 cm and spanning 450 years. ICP–MS analysis also was conducted on a modern freshwater shell subjected to kiln firing. Microscopy results indicate a pristine aragonite crystal structure in the archaeological samples. ICP–MS data show that certain trace elements within the modern shell maintain their concentration after firing at 500 °C. The broader implications are: 1) that diagenetic alteration does not hinder chemical sourcing of shell at Lyon's Bluff, and 2) that certain trace elements are more reliable than others, namely Sr²⁺, Al²⁺, Ba²⁺, and Mn²⁺, when conducting trace element provenance studies on fired-shell temper.     

Sub‐micron spongiform porosity is the major ultra‐structural alteration occurring in archaeological bone

Total pore volume and pore size distribution are indicators of the degree of post‐mortem modification of bone. Direct measurements of pore size distribution in archaeological bones using mercury intrusion porosimetry (HgIP) and back scattered scanning electron microscopy (BSE‐SEM) reveal a common pattern in the changes seen in degraded bone as compared to modern samples. The estimates of pore size distribution from HgIP and direct measurement from the BSE‐SEM images show remarkable correspondence. The coupling of these two independent approaches has allowed the diagenetic porosity changes in human archaeological bone in the >0.01 µm range to be directly imaged, and their relationship to pre‐existing physiological pores to be explored. The increase in porosity in the archaeological bones is restricted to two discrete pore ranges. The smaller of these two ranges (0.007–0.1 µm) lies in the range of the collagen fibril (0.1 µm diameter) and is presumably formed by the loss of collagen, whereas the larger pore size distribution is evidence of direct microbial alteration of the bone. HgIP has great potential for the characterization of microbial and chemical alteration of bone. Copyright © 2002 John Wiley & Sons, Ltd.     

An Investigation Into the Relationship Between Funerary Treatment and Bacterial Bioerosion in European Archaeological Human Bone

A central problem in funerary archaeology is interpreting how the corpse was manipulated in the immediate post mortem period. The extent of bacterial bioerosion to the internal bone microstructure has been proposed as a means to infer the early post mortem history of a corpse, as it has been suggested that this form of bone diagenesis is produced by an organism's putrefactive gut bacteria. Under this model, different forms of funerary treatment would be expected to leave characteristic signatures of bioerosion in archaeological bone. Here, we tested the extent to which bacterial bioerosion of ancient human bones reflected funerary treatment, through histological analysis of 301 archaeological human bone thin sections from 25 European archaeological sites. We found that bioerosion was significantly influenced by whether a bone originated from a neonatal individual or an anoxic context. When these remains were excluded, bioerosion was controlled by archaeological phase in a manner consistent with known early post mortem treatment and forensic models of bodily decomposition. These findings suggest that microscopic analyses of bone have useful applications in reconstructions of funerary processes and provide some insight into factors that may control the persistence of organic biomolecules and fossilization.     

Lead isotope analysis of intra‐skeletal variation in a 19th century mental asylum cemetery: diagenesis versus migration

Living bone sequesters environmental lead (Pb) from both inhalation and ingestion, providing a record of Pb exposure over a lifetime. Questions about the effects of diagenesis and how to remove them have hampered most isotopic and elemental determinations. As a result, researchers often restrict their analyses to tooth enamel, despite its limitations. We report Pb isotopes in teeth and bones in a frontier population of 15 individuals from a late 19th century mental hospital graveyard in Pueblo, Colorado, a town active at that time in the smelting of ores. Analysis of lead isotopes sequestered in healing bone from rib fractures gives an isotopic fingerprint from the last few months of individual's lives. When bone tissues or teeth from different stages of life are analysed, life history trajectories such as migration routes can be developed which are partially self‐correcting for diagenesis. Copyright © 2005 John Wiley & Sons, Ltd.     

Pick the Right Pocket. Sub‐sampling of Bone Sections to Investigate Diagenesis and DNA Preservation

Many archaeological bones display a heterogeneous degradation pattern. Highly degraded bones could contain pockets of well‐preserved bone, harbouring good quality DNA. This dichotomy may explain why the relationships between global bone preservation parameters such as histological integrity, bone mineral crystallinity or collagen yield, and bulk DNA preservation/amplification success rate have been found to be at best, weak to moderate. In this pilot study, we explore whether or not a more localised approach will highlight a stronger relationship between diagenetic parameters and DNA preservation. This study includes a detailed histological characterisation of bone diagenesis in sub‐areas of three bone samples. Regions of the same bone, which displayed differential degrees of preservation or type of diagenesis were sampled for further analysis and both genetic (small scale Illumina MiSeq sequencing) and chemical (Fourier‐transform infrared spectrometric analysis) analyses were performed. The aim was to investigate how bone diagenetic processes relate to DNA preservation at a higher resolution than in previous studies. This is key in order to improve DNA analytical success rates. The expected relationship between bone and DNA preservation (retrieved endogenous DNA) was observed and the results corroborate previous work that DNA preservation is linked to the integrity of bone collagen and mineral. The results further suggest that non‐biological diagenetic alterations such as etching and the presence of mineral infiltrations and inclusions have a negative effect on DNA preservation/extraction. Copyright © 2016 John Wiley & Sons, Ltd.