Deficiencies and challenges in the study of ancient tuberculosis DNA

We explore the standards of research and reporting needed to justify the destructive analysis of archaeological human bone for biomolecular studies of ancient tuberculosis (TB). Acceptable standards in osteological interpretation have been met in some biomolecular papers, but there are also cases where insufficient care has been taken in distinguishing between pathognomonic lesions and those that are ‘consistent with’ a diagnosis of TB. Some biomolecular studies have failed to recognize that archaeological bones might be contaminated with environmental mycobacteria whose DNA could give rise to false positives in polymerase chain reactions directed at members of the Mycobacterium tuberculosis complex. The difficulties of applying spoligotyping to ancient DNA have also been underestimated and conclusions drawn from such analyses are often weakly supported. Assumptions that mycobacterial DNA preserves better than human DNA, and that contamination with modern DNA is less of a problem, has led in some cases to a laxity in research standards with insufficient attention paid to the need to authenticate ancient DNA results. We illustrate our concerns by reference to a recent paper reporting biomolecular detection of ancient TB DNA in skeletons from the eastern Mediterranean Neolithic settlement of Atlit-Yam. We are unconvinced that the skeletal evidence presented in this paper gives sufficient indication of TB to warrant destructive analysis, and we are concerned that during the biomolecular part of the project inadequate attention was paid to the possibility that results might be due to laboratory cross-contamination or to amplification of environmental mycobacterial DNA present in the bones.     

POSTMODERNISM AND HISTORY: MISSING THE MISSED CONNECTIONS

O n the F uture of H istory : T he P ostmodernist C hallenge and I ts A ftermath . By Ernst Breisach.     

Rocks are heavy: transport costs and Paleoarchaic quarry behavior in the Great Basin

Central place foraging models are used to investigate assemblage variability at two Paleoarchaic (terminal Pleistocene/early Holocene) dacite quarries in the central and eastern Great Basin. Our analyses focus specifically on biface reduction and how varying degrees of reduction relate to the costs of transporting the resulting products upon departing the quarry. Our results suggest that when the distance to be traveled to a residential base is great, reduction will proceed further at the quarry than if the residential base is fairly close. Further, a residential site assemblage will consist of bifaces at later stages of reduction than its associated quarry.     

Detecting the medieval cod trade: a new method and first results

This paper explores the potential of stable isotope analysis to identify the approximate region of catch of cod by analysing bones from medieval settlements in northern and western Europe. It measures the δ¹³C and δ¹⁵N values of cod bone collagen from medieval control samples collected from sites around Arctic Norway, the North Sea, the Kattegat and the Baltic Sea. These data were considered likely to differ by region due to, for example, variation in the length of the food chain, water temperature and salinity. We find that geographical structuring is indeed evident, making it possible to identify bones from cod caught in distant waters. These results provide a new methodology for studying the growth of long-range trade in dried cod and the related expansion of fishing effort—important aspects of the development of commercialisation in medieval Europe. As a first test of the method, we analyse three collections of cod bones tentatively interpreted as imported dried fish based on a priori zooarchaeological criteria. The results tentatively suggest that cod were being transported or traded over very long distances since the end of the first millennium AD.     

The Application of Steroidal Biomarkers to Track the Abandonment of a Roman Wastewater Course at the Agora (Athens,Greece)*

A subterranean, stone‐built, sediment‐filled culvert discovered during excavations at the Agora (Athens, Greece) was dated to the Roman period on the basis of its characteristic construction and associated finds, including coins. The location of the culvert relative to other adjacent watercourses and an ancient river bed suggested that the structure was a sewer. This was confirmed through a multi‐molecular biomarker approach based on analysis of the bile acids associated with sediment filling the sewer, using gas chromatography (GC) and gas chromatography/mass spectrometry (GC/MS). The acid fraction contained predominantly deoxycholic and lithocholic acids, while the neutral steroid fraction comprised a complex mixture of Δ⁵ sterol and 5β‐ and 5α‐stanols, dominated by coprostanol, suggesting the presence of faecal matter of predominantly human origin. The concentrations of neutral and acidic faecal biomarkers were observed to vary in tandem, with the highest concentrations being found in the sediment at the base of the fill in the culvert. A reduction in concentration occurred with decreasing depth of the fill, with concentrations in the uppermost samples being little different from control samples of sediment taken beyond the confines of the culvert. The enhanced concentration of bile acids relative to 5β‐stanols compared with fresh human faeces must reflect the enhanced diagenetic stability of the former, thereby making bile acids the possibly preferred biomarker for this type of study. The quantitative data obtained suggest that the culvert fell rapidly out of use, possibly coinciding with the Slavic incursion in AD 582–3.     

Production Networks and Consumer Choice in the Earliest Metal of Western Europe

The earliest metal objects and metal production practices appeared in Western Europe during the fourth and third millennia BC. The presence of earlier dates for copper, gold, silver, and lead, as well as arsenical copper and tin-bronze alloys in Central and Eastern Europe implies that there is no evidence for the independent invention of metallurgy in Western Europe. Instead, the acquisition of metal objects as exotica by communities appears to have led eventually to the movement of people possessing metallurgical expertise. However, the metals, production techniques and object forms used in each region reflect local standards seen in other materials. This implies a process of incorporation and innovation by the communities involved rather than a straightforward or inevitable adoption. The presence of metal may have created new networks of communication and exchange but, due to its small scale, there is no evidence for any metallurgical revolution.