DNA analysis of archaeological sheep remains from China

Recent research has thrown considerable light on the history of the domestic sheep, but has not extended to ancient sheep specimens. In the present study, ancient DNA analysis was carried out on eight archaeological sheep remains recovered from Erlitou archaeological site in Henan Province (ca. 2100–1800 B.C.) to explore the genetic structure of ancient sheep and the phylogenetic relationship between ancient and modern sheep. We analyzed the control region sequences and coding regions of mitochondrial DNA from the remains by direct sequencing and restriction fragment length polymorphism analysis, respectively. Our results reveal that all ancient sheep belong to lineage A defined by modern sheep sequences. Phylogenetic analysis shows that neither argali (Ovis ammon) nor urial (Ovis vignei) mtDNA is closely related to Erlitou ancient sheep. In addition, our results suggest that ancient DNA analysis can serve as a powerful tool in tracing prehistoric population movement.     

Dipterous remains and archaeological interpretation

Fossil flies from archaeological settlements can give information on details of everyday life, hygiene, disease and death. Previous work is reviewed and recent research on material from a Greenlandic farm shows the range of the technique and highlights its potential to reconstruct important aspects of human activities that otherwise go unnoticed.     

Modeling wood acquisition strategies from archaeological charcoal remains

Archaeological charcoal remains are often used to reconstruct local woodland composition in the past, but rarely address how and why people may have selected specific woody taxa for particular purposes. Models from the field of human behavioral ecology predict that people forage for wood resources by taking into account the relative usefulness, abundance, and handling time related to procuring different wood types. Archaeological and ecological data from the site of Gordion, in Central Anatolia (modern Turkey), were used to test expectations associated with such models. Results suggest that inhabitants of Gordion used wood types for fuel in proportion to their local availability, but that they selected specific, more distant woods for construction. In most occupation periods pine was preferred for construction, perhaps because it produces long, straight timbers for roofing, despite the distance at which it grows from the site. This case study demonstrates that behavioral ecology modeling can help to distinguish between multiple wood acquisition strategies potentially used in the past and improve our understanding of wood use from archaeological charcoal remains.     

A new miniSTR heptaplex system for genetic fingerprinting of ancient DNA from archaeological human bone

The analysis of short tandem repeats (STRs) is a useful tool in various contexts of ancient DNA research. Main applications are the reconstruction of kinship, identification, and authentication. Here we describe a short amplicon autosomal short tandem repeat (miniSTR) heptaplex system for the amplification of D13S317, D21S11, D18S51, TH01, D5S818, FGA and Amelogenin from highly degraded DNA as an inexpensive alternative to commercially available kits. All primers were newly designed and the amplicon length of all systems is less than 200 bp, with the exception of some rare alleles in the FGA and D21S11 systems. To validate the suitability of this system for typing STRs from human specimens with low DNA preservation we systematically tested it on 20 skeletal samples from four archaeological sites representing different burial environments and time spans since death. Finally, to test the sensitivity of the heptaplex system, we analyzed serial dilutions of control DNA and ancient DNA extracts. Using the system we were able to reproducibly obtain full STR profiles, down to a concentration of 0.06 ng DNA. Even with 0.004 ng DNA partial profiles could be amplified. The accumulated power of discrimination for the six selected STR loci is 0.99999984, plus the option of genetic sex determination through Amelogenin. The tests conducted prove that the system presented is efficient and especially suited for cases where STRs have to be typed and sex has to be assessed from human specimens with highly degraded DNA.     

Recovery of DNA from archaeological insect remains: first results,problems and potential

We report the recovery of short fragments of PCR amplifiable ancient DNA from exoskeletal fragments of the grain weevil Sitophilus granarius (L.) extracted from Roman and medieval deposits in Northern England. If DNA preservation in archaeological insect remains is widespread then many applications in the spheres of evolutionary studies and archaeology can be conceived, some of which are outlined.     

The ethics of displaying human remains from British archaeological sites

Abstract

The 1998 exhibition London Bodies at the Museum of London provided an opportunity to review the ethical issues relating to the excavation, study and display of human remains in modern Britain. It is suggested that for most Britons the display of human skeletal material is not considered a problem, but that archaeologists would do well to ensure that their practices are in line with the views and beliefs of the society in which they work.     

DNA analysis of archaeological rabbit remains from the American Southwest

Ancient DNA analysis was carried out on 20 archaeological rabbit remains from an early Pueblo II period site in Colorado (circa 1000 A.D.) to explore the possibility of obtaining accurate rabbit genus and species identifications. The presence of abundant rabbit remains at archaeological sites in the American Southwest indicates the importance of rabbit species in the subsistence economy and ritual activities of early aboriginal populations. The study of these remains is hindered by the difficulty of accurate identification due to the fragmentary nature of the bones and the lack of genus- and species-specific morphological features.A short cytochrome b gene fragment was amplified and sequenced to produce a genetic profile for each bone sample. At the genus level, the DNA identifications were consistent with those based on the analysis of mandible morphology for the majority of specimens. When compared to species-specific reference DNA sequences, Lepus americanus and Lepus californicus samples were easily identified. Identification of an unexpected L. americanus (snowshoe hare) from the remains provided new information concerning hunting ranges or exchange between groups in the region. Sylvilagus nuttallii and Sylvilagus audubonii, however, could not be confidently differentiated at this point due to the difficulty in obtaining accurate species-specific reference sequences.The inability to obtain such reference sequences can be a serious problem for DNA species identification of non-domestic animals that lack population-level genetic data and have few sequences available in GenBank. The lack of the DNA data increases the possibility that inappropriate reference sequences could be applied, resulting in false species identification even when authentic DNA is retrieved and amplified from ancient remains.     

Collagen deamidation in archaeological bone as an assessment for relative decay rates

Attempts to extend methods for dating archaeological bones beyond that of radiocarbon dating, such as amino acid racemization, have met with limited success owing to the dependence on multiple environmental factors and controls. Despite facing similar challenges, deamidation of glutamine has recently been investigated as a potential indicator of ‘thermal age' in archaeological bones, as well as a measure of their preservation quality. In this study, we undertook a series of simulated diagenetic experiments to understand the various factors affecting deamidation. Further, we analysed bones from different Middle Palaeolithic layers from Grotte Mandrin (France), with the results suggesting potential use of deamidation for relative dating, but only in case of extremely well‐preserved layers. The results also suggested the possible use of attenuated total reflectance‐Fourier transform infrared (ATR‐FTIR) spectroscopy as a screening test for soluble collagen before proteomic analysis.     

Characterisation of archaeological mortars and plasters from kyme (Turkey)

The present study focuses on the compositional characterisation of Roman, proto-Byzantine and Medieval mortars, sampled in the archaeological site of Kyme (Turkey), an Aeolian city, founded in the middle of the XI century BC by Greek populations. The mortars were studied through elemental (SEM-EDS, XRF), mineralogical (XRPD, De Astis calcimeter) and petrographic (polarised optical microscopy) analysis. The comparison between the samples allowed us to emphasise compositional differences within mortars of the same historical period.In particular, we detected the prevalent use of cocciopesto, which was used as a pozzolanic additive to create hydraulic mortars in the Roman and Byzantine period. The cocciopesto was used to improve the technological properties of an initially slaked lime. Furthermore, compositional similarities allowed us to attribute an unknown sample to the Roman period. Our study also pointed out the fact that the lower quality mortars belonged to the Medieval period. As a matter of fact, the most friable sample belonging to the Middle Ages turned out to be a mixture of clay, lime and volcanic sand.     

Bird remains from the archaeological site of Guinea (El Hierro,Canary Islands)

The first data on bird hunting by the ancient people from El Hierro island are given here. Ninety-three bones have been examined from a cave situated in the archaeological site of Guinea. The majority of the bones are broken, burned and some of them have cuts showing human exploitation. There are species that have been eaten from the lower levels to the present day (Calonectris diomedea, Columba sp. and Corvus corax), one species that does not now live on El Hierro (cf. Pyrrhocorax pyrrhocorax), and an extinct species (Coturnix gomerae). © 1997 John Wiley & Sons, Ltd.     

Developmental defects and postmortem changes in archaeological pig teeth from Fais Island,Micronesia

The study investigated developmental defects of the dental hard tissues and postmortem changes in archaeological pig molars from Fais Island, Micronesia. The developmental defects of enamel were indicative of a disturbance of the secretory stage (accentuation of the incremental pattern, occurrence of Wilson bands and of hypoplastic defects) and the maturation stage of amelogenesis (hypomineralisation). Presence of coronal cementum in an M₃ indicated a partial premature breakdown of the reduced enamel epithelium or a partial demise of the enamel organ earlier during tooth development. Developmental defects of dentine presented as accentuated Andresen lines and areas of interglobular dentine. The pattern of developmental defects in the studied molars and the fact that deciduous premolars of the pigs from Fais did not exhibit developmental defects on macroscopic inspection are consistent with the hypothesis that the tooth defects were caused by periods of severe nutritional stress occurring after weaning. Postmortem changes caused by microbial infiltration were recorded in dentine and cementum. A presumed case of soft tissue preservation in the form of presence of odontoblast processes was observed in an M¹.     

The cost-effectiveness of certain methods of recovering macroscopic organic remains from archaeological deposits

In a survey, carried out to investigate the cost-effectiveness of the main methods used to recover macroscopic organic remains from archaeological deposits, it was found that sampling and recovery methods employed varied widely between individual workers. Sample type, recovery method and experience of the worker influenced the time taken to produce identified material, but it was clear that this is an expensive activity which must be justified in terms of information output.     

Absence of premolar teeth from ruminant mandibles found at archaeological sites

Three bovine and three ovine mandibles are described in each of which the second permanent premolar tooth was absent. In one of the bovine jaws an absence of the fifth cusp of the third molar was also noted. A review of tooth absence in wild and domestic bovidae is presented and suggestions are made as to the reason for absence.     

Ancient bacterial DNA (aDNA) in dental calculus from archaeological human remains

The purpose of this study was to identify reactive bacterial aDNA in archaeological human dental calculus. Dental calculus was collected from a middle/late Neolithic human skull from Hulbjerg passage grave, Langeland, Denmark and prepared for transmission electron microscopy (TEM) or gold-labeled antibody TEM. TEM showed calcified, as well as non-calcified bacteria. Immunogold labeling occurred over the cytoplasmic portions of the sectioned bacteria. The result demonstrated that it is possible to identify aDNA sequences from bacteria in archaeological material of considerable age by this technique.     

Detection of exposed and subsurface archaeological remains using multi-sensor remote sensing

Multi-sensor airborne remote sensing has been applied to the Itanos area of eastern Crete to assess its potential for locating exposed and known buried archaeological remains, and to delineate subsurface remains beyond the current limits of ground geophysical data in order to permit future targeted geophysical surveys and archaeological excavations. A range of processing techniques (e.g., Reed–Xiaoli anomaly detection) have been applied to the CASI, ATM and lidar data in order to detect anomalies based on the premise that buried remains are likely to alter the physical and chemical characteristics of the soil compared with those of the surroundings due to variations in soil depth and drainage. Through a combination of CASI, ATM and lidar data, surface remains have been classified and mapped effectively using an object-oriented approach. The detection of subsurface remains is more problematic; however, the thermal data is most promising in this respect. The value of capturing multi- or hyperspectral data at a high spatial resolution has been demonstrated as well as the additional benefits of combining these with airborne lidar.     

Genetic analysis of archaeological wood remains: first results and prospects

A total of 51 ancient oak wood samples originating from various European archaeological sites, dating from the Neolithic period to the 18th century, were assayed for the presence of reproducible chloroplast (cp) DNA sequences. Five polymorphic chloroplast fragments were targeted. Only five of the samples could be fully genetically characterised, revealing four different oak cpDNA haplotypes. In all cases, the haplotypes detected on ancient woods and the haplotypes characterised from fresh samples from the same localities matched. Overall, this congruence is consistent with a genetic continuity between ancient and modern European oaks, confirming the hypothesis that the mapped genetic patterns largely reflect the original structure that established during the post-glacial. This stability of the genetic structure implies that, in the future, the technique could be used to infer or confirm the transport of wood by man, providing interesting perspectives for the genetic analysis of ancient woods.     

The identification of charred archaeological remains of vegetative parenchymous tissue

The biased way in which some inferences may be drawn from archaeobotanical assemblages, due to problems in identification, is briefly discussed. A potentially important class of plant remains, vegetative parenchymous organs, commonly sources of food, are indicated as being such a class rarely identified from archaeological contexts. Their identification based on characters of the plants' anatomy and morphology together with an understanding of the way in which tissues degrade on preservation by charring is suggested. Characters of the charred tissues that make up vegetative parenchymous organs are described in detail. The processes of sorting and identification are then briefly discussed.     

Radiographic clues to fractures of distal humerus in archaeological remains

Today, distal humeral fractures occur most frequently in children and adolescents, and are usually the result of a fall onto extended arms, or less often on flexed elbows. Trauma to the distal humerus at the physis and epiphyses often produces non‐displaced or mildly displaced fractures that are difficult to recognize radiographically. To help identify these types of injuries, clinicians have developed two measurement techniques that are applied to the X‐rays of the injured bones. In a preliminary attempt to assess the usefulness of these measurement techniques for recognizing trauma in archaeological skeletal remains, 25 humeri from two Ontario ossuary samples were submitted to radiography. Clinical data on distal humeral fractures, their incidence, and mechanisms of injury were also used to interpret the lifestyles and cultural activities of the aboriginal individuals under study. While only one healed fracture was suspected after gross observation, a total of four fractures were ultimately identified using the two measurements, the humerotangential‐angle (HTA) and the anterior hunieral line (AHL). Our results provide indirect, but telling, evidence of accidental childhood injuries to distal humerus in an archaeological population. Copyright © 2001 John Wiley & Sons, Ltd.