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1.
《International Journal of Osteoarchaeology》2017,27(3):365-374
Many archaeological bones display a heterogeneous degradation pattern. Highly degraded bones could contain pockets of well‐preserved bone, harbouring good quality DNA. This dichotomy may explain why the relationships between global bone preservation parameters such as histological integrity, bone mineral crystallinity or collagen yield, and bulk DNA preservation/amplification success rate have been found to be at best, weak to moderate. In this pilot study, we explore whether or not a more localised approach will highlight a stronger relationship between diagenetic parameters and DNA preservation. This study includes a detailed histological characterisation of bone diagenesis in sub‐areas of three bone samples. Regions of the same bone, which displayed differential degrees of preservation or type of diagenesis were sampled for further analysis and both genetic (small scale Illumina MiSeq sequencing) and chemical (Fourier‐transform infrared spectrometric analysis) analyses were performed. The aim was to investigate how bone diagenetic processes relate to DNA preservation at a higher resolution than in previous studies. This is key in order to improve DNA analytical success rates. The expected relationship between bone and DNA preservation (retrieved endogenous DNA) was observed and the results corroborate previous work that DNA preservation is linked to the integrity of bone collagen and mineral. The results further suggest that non‐biological diagenetic alterations such as etching and the presence of mineral infiltrations and inclusions have a negative effect on DNA preservation/extraction. Copyright © 2016 John Wiley & Sons, Ltd. 相似文献
2.
In the ground, bone undergoes chemical and physical changes which affect its preservation. This fact has important implications for dating and other analytical procedures involving bone, as well as faunal analysis where differential preservation of bones of different species may affect conclusions regarding the relative significance of an animal to the economy of a given society. The diagenic processes in bone range from minor changes in the bone protein to complete structural and chemical breakdown.Using fresh cow bone, we conducted laboratory experiments which simulate the effect of temperature and bone size on the rate and nature of bone disintegration in archaeological sites. Temperature influences the rate of chemical change, and bone size and density affect the accessibility of the molecular constituents of bone to extrinsic chemical reactions. These findings clarify the importance of two well-known concepts in bone taphonomy. (1) The rate of chemical breakdown in bone tissues is related to the proximity of a given unit of tissue to the bone surface. This means that, in archaeological bone samples, tissue near the surface may be different chemically from tissue away from the surface and great care is necessary in choosing and preparing bone samples for analytical procedures. (2) In general, small bones are not as well preserved as large bones, therefore small animals are likely to be underrepresented in faunal assemblages. 相似文献
3.
T. J. Booth 《Archaeometry》2016,58(3):484-499
A central problem in funerary archaeology is interpreting how the corpse was manipulated in the immediate post mortem period. The extent of bacterial bioerosion to the internal bone microstructure has been proposed as a means to infer the early post mortem history of a corpse, as it has been suggested that this form of bone diagenesis is produced by an organism's putrefactive gut bacteria. Under this model, different forms of funerary treatment would be expected to leave characteristic signatures of bioerosion in archaeological bone. Here, we tested the extent to which bacterial bioerosion of ancient human bones reflected funerary treatment, through histological analysis of 301 archaeological human bone thin sections from 25 European archaeological sites. We found that bioerosion was significantly influenced by whether a bone originated from a neonatal individual or an anoxic context. When these remains were excluded, bioerosion was controlled by archaeological phase in a manner consistent with known early post mortem treatment and forensic models of bodily decomposition. These findings suggest that microscopic analyses of bone have useful applications in reconstructions of funerary processes and provide some insight into factors that may control the persistence of organic biomolecules and fossilization. 相似文献
4.
Isotopic analysis of human bone is becoming an increasingly important tool for the archaeologist in divining past life-ways. The isotopic ratios within bone are often assumed to be preserved as in life, but diagenetic change can alter the ratios, invalidating the results of isotopic analysis. Diagenesis can be evaluated in a number of ways, but most often spectroscopic techniques are utilised as the most efficient and easiest to understand methods for the archaeologist. Many isotopic studies do not report the possibility of diagenetic change, and if it is reported it has often been quantified using a single method of chemical analysis, FTIR spectroscopy. This study set out to test the value of FTIR analysis using human remains from the prehistoric site of Ban Non Wat, Northeast Thailand, and to compare the results with the non-destructive technique of FT-Raman spectroscopy. The study shows that FTIR spectroscopic analysis gives far less detail on the condition of bone than Raman spectroscopy, which does not merely indicate recrystallisation has occurred, but also shows clearly whether or not collagen is present, allows identification of ionic substitions which have occurred and identification of secondary minerals which have formed. Raman spectroscopy, combined with LA-ICP-MS analysis also revealed that soil composition and groundwater flow are the conditions which most affect diagenesis at Ban Non Wat. 相似文献
5.
Archaeological bone undergoes alterations after burial (diagenesis) that constitute a problem for the survival of archaeological information. A common method to assess this alteration is Fourier transform infrared spectrometry (FTIR). However, the commonly applied method (FTIR–KBr) is destructive and sample preparation may influence the results. This paper tests the suitability of FTIR attenuated total reflection (FTIR–ATR), a method not commonly used to investigate bone diagenesis. FTIR–ATR requires less sample preparation and can be non‐destructive, allowing analysis of bone cross‐sections. Modern and archaeological bones were analysed using both methods and different sample preparation methods were tested. The results show that FTIR–ATR has advantages for the rapid assessment of bone diagenesis. 相似文献
6.
A. M. H. Eriksen H. Matthiesen I. Kontopoulos D. Gregory C. Snoeck G. Zhang M. J. Collins M. T. P. Gilbert 《Archaeometry》2020,62(4):827-846
The rate at which endogenous DNA from differently prepared (butchered, boiled and baked) compact pig bones degrades in five different Danish terrestrial and marine environments over 12 months was investigated. Although > 70% of the estimated endogenous mtDNA is lost after just four weeks of exposure, no cytosine deamination of DNA was recognised. A correlation between the presence of oxygen and the amount of preserved DNA was observed. The results provide valuable information on the interaction between the endogenous DNA and the depositional environment in the early stages of bone diagenesis, which can be a support in the interpretation of the initial diagenetic pathways of archaeological bone. 相似文献
7.
G. Turner‐Walker C. M. Nielsen‐Marsh U. Syversen H. Kars M. J. Collins 《International Journal of Osteoarchaeology》2002,12(6):407-414
Total pore volume and pore size distribution are indicators of the degree of post‐mortem modification of bone. Direct measurements of pore size distribution in archaeological bones using mercury intrusion porosimetry (HgIP) and back scattered scanning electron microscopy (BSE‐SEM) reveal a common pattern in the changes seen in degraded bone as compared to modern samples. The estimates of pore size distribution from HgIP and direct measurement from the BSE‐SEM images show remarkable correspondence. The coupling of these two independent approaches has allowed the diagenetic porosity changes in human archaeological bone in the >0.01 µm range to be directly imaged, and their relationship to pre‐existing physiological pores to be explored. The increase in porosity in the archaeological bones is restricted to two discrete pore ranges. The smaller of these two ranges (0.007–0.1 µm) lies in the range of the collagen fibril (0.1 µm diameter) and is presumably formed by the loss of collagen, whereas the larger pore size distribution is evidence of direct microbial alteration of the bone. HgIP has great potential for the characterization of microbial and chemical alteration of bone. Copyright © 2002 John Wiley & Sons, Ltd. 相似文献
9.
Differential cement mineralogy is influenced by depositional textures, structural deformation, pore fluid chemistry, and ultimately influences landscape evolution by introducing heterogeneities in erodibility. In Southern Utah, the region West of the Kaibab uplift known as Mollies Nipple (Mollies) in Grand Staircase‐Escalante National Monument exhibits a complex history of fluid–sediment interactions, which has resulted in a localized zone of anomalous diagenetic iron sulfate (jarosite) mineralogy in a well‐exposed dune–interdune deposit within the Navajo Sandstone. Mineralogy and geochemistry of cements within this region are examined using reflectance and imaging spectroscopy, field investigations, microscopy, and whole‐rock geochemical analyses. These data show that the in‐situ jarosite cement is localized to a plane along the highest ridge of the butte, providing an armor along with other secondary cements, which controls the butte's geomorphic evolution. The jarosite cement is associated with other mineralogies suggesting that the sulfate was one of the latest fluid‐related precipitates in the paragenetic sequence. It was preceded by a regional bleaching event, precipitation of clay cements, some localized concretionary iron oxide precipitation, and formation of deformation bands. At least one generation of dense iron oxide mineralization is associated with cataclastic brittle deformation predating the sulfate precipitation. Trace element geochemistry of cements shows certain metal oxide populations associated with extremely high (>2000 ppm) arsenic values. We interpret the combination of spatial mineral distribution, observed paragenetic sequence, and trace element geochemistry to suggest this region experienced acid sulfate diagenesis along fracture‐controlled fluid conduits related to weathering of proximal, unidentified, sulfides, or H2S associated with deep source beds. Jarosite is highly soluble, and its presence suggests that abundant fluid flow has not occurred in this region since its formation. This terminal cement‐forming event must have occurred prior to sandstone exhumation and erosion to form the current extreme landscape at Mollies. This site exhibits the influence that fluid geochemistry, sedimentary mineralogy, and structural fabric have on geomorphic evolution. 相似文献
10.
H. I. Hollund N. Arts M. M. E. Jans H. Kars 《International Journal of Osteoarchaeology》2015,25(6):901-911
Teeth are often the preferred source material for isotopic and genetic assay involving ancient biomolecules. The assumption is that dental tissue preserves better due to its anatomically protected location, the enamel cap, and lower porosity compared to bone. However, this assumption has not been widely tested. Some similarities in diagenetic processes are to be expected due to similarities in structure and chemical composition of dentine and bone. This has led to the suggestion that bone can be used as an indicator of dental preservation, as a pre‐screening technique in the selection of suitable samples for biomolecular studies. Thus, direct testing of the correlation between bone and tooth preservation and diagenesis is needed. This paper reports the results of the histological characterization of diagenetic alterations within 25 human femur–tooth pairs, from a Medieval to modern (AD 1850) cemetery in Eindhoven, the Netherlands. The results showed that teeth do indeed preserve better overall, but not always, and that this was dependent on the main diagenetic factor(s) at the burial location. Furthermore, good correlations are found between the microstructural preservation of bone and teeth; similar processes of decay were observed within bone and teeth of the same individual. Overall, the study demonstrated that histological analysis of bone is useful for the identification of degradation processes that affect biomolecular preservation in skeletal material. In this way, sample selection and analytical strategies can be optimized. Copyright © 2013 John Wiley & Sons, Ltd. 相似文献
11.
N. W. Bower S. R. Getty C. P. Smith Z. R. Simpson J. M. Hoffman 《International Journal of Osteoarchaeology》2005,15(5):360-370
Living bone sequesters environmental lead (Pb) from both inhalation and ingestion, providing a record of Pb exposure over a lifetime. Questions about the effects of diagenesis and how to remove them have hampered most isotopic and elemental determinations. As a result, researchers often restrict their analyses to tooth enamel, despite its limitations. We report Pb isotopes in teeth and bones in a frontier population of 15 individuals from a late 19th century mental hospital graveyard in Pueblo, Colorado, a town active at that time in the smelting of ores. Analysis of lead isotopes sequestered in healing bone from rib fractures gives an isotopic fingerprint from the last few months of individual's lives. When bone tissues or teeth from different stages of life are analysed, life history trajectories such as migration routes can be developed which are partially self‐correcting for diagenesis. Copyright © 2005 John Wiley & Sons, Ltd. 相似文献
12.
《International Journal of Osteoarchaeology》2017,27(6):1070-1077
This study compared bone collagen extraction techniques that included treatment with sodium hydroxide and 30 kDa ultrafilters using a set of well‐preserved, humic‐contaminated archaeological marine mammal bones. Treatment with sodium hydroxide was effective at removing humic contaminants from archaeological bone, although yields were significantly decreased. Yields were also significantly decreased by ultrafiltration although this study produced no evidence that 30 kDa ultrafilters were effective at selectively removing humic contaminants from archaeological bone. The combination of sodium hydroxide treatment and ultrafiltration did not produce superior results to the treatment involving only sodium hydroxide. Archaeological samples exhibiting darker colouration indicative of humic contamination should be treated with sodium hydroxide to remove these contaminants. Copyright © 2017 John Wiley & Sons, Ltd. 相似文献
13.
Fungal communities associated with three osteoarchaeological samples from distinct archaeological sites (T?rian, Turda?, Feleacu) in Transylvania, Romania, characterized by similar environmental conditions (wet soils), different historical age and amount of time spent in storage, were examined in order to register site‐ versus storage‐specific species. Physical anthropological taphonomic scoring was correlated with Fourier transform infrared spectroscopy (FTIR) indices in order to characterize mineral and organic bone fraction fluctuations relative to historical age. Molecular‐based species/genera identifications and scanning electron microscopy (SEM) investigations were carried out for the confirmation of dominant taxonomic items. 相似文献
14.
F. Donald Pate 《Journal of Archaeological Method and Theory》1994,1(2):161-209
Bone chemistry paleodietary studies are emerging as important research areas in archaeology, biological anthropology, and paleontology. With appropriate controls, the inorganic and organic chemical composition of bones and teeth can provide information about past diet and habitat use. Chemical signatures are used to address individual dietary variability in early hominid fossils, paleontological remains, and more recent human and faunal populations. 相似文献
15.
The soluble and exchangeable ions for a soil profile from the Roonka archaeological site. Lower Murray Basin, South Australia, are compared with the total elemental content of the soils. Since the chemical composition of post-mortem ionic substitution phases and secondary minerals in archaeological bone will depend on the availability of ions to the soil solution under field conditions, it is suggested that models addressing diagenesis in bone employ soluble and exchangeable ions rather than total elemental soil data. 相似文献
16.
Joseph B. Lambert Sharon Vlasak Simpson Susan Gorell Weiner Jane E. Buikstra 《Journal of archaeological science》1985,12(2):85-92
Excavated human bone was exposed to aqueous solutions containing high concentrations of a single added metal ion in order to examine the extent of introduction of contaminating materials during burial. Variables included pH, temperature, ion concentration, state of bone (whole or crushed), structure of buffer, and counterion. Calcium and sodium showed little increase, and even a decrease in some cases. Strontium, zinc, lead, and magnesium showed large increases probably through heteroionic replacement of calcium. Manganese, aluminum, and potassium showed increases, particularly under neutral conditions, probably through infiltration into voids and defects. 相似文献
17.
Calcite veins at outcrop in the Mesozoic, oil‐bearing Wessex Basin, UK, have been studied using field characterization, petrography, fluid inclusions and stable isotopes to help address the extent, timing and spatial and stratigraphic variability of basin‐scale fluid flow. The absence of quartz shows that veins formed at low temperature without an influence of hydrothermal fluids. Carbon isotopes suggest that the majority of vein calcite was derived locally from the host rock but up to one quarter of the carbon in the vein calcite came from CO2 from petroleum source rocks. Veins become progressively enriched in source‐rock‐derived CO2 from the outer margin towards the middle, indicating a growing influence of external CO2. The carbon isotope data suggest large‐scale migration of substantial amounts of CO2 around the whole basin. Fluid inclusion salinity data and interpreted water‐δ18O data show that meteoric water penetrated deep into the western part of the basin after interacting with halite‐rich evaporites in the Triassic section before entering fractured Lower and Middle Jurassic rocks. This large‐scale meteoric invasion of the basin probably happened during early Cenozoic uplift. A similar approach was used to reveal that, in the eastern part of the basin close to the area that underwent most uplift, uppermost Jurassic and Cretaceous rocks underwent vein formation in the presence of marine connate water suggesting a closed system. Stratigraphically underlying Upper Jurassic mudstone and Lower Cretaceous sandstone, in the most uplifted part of the basin, contain veins that resulted from intermediate behaviour with input from saline meteoric water and marine connate waters. Thus, while source‐rock‐derived CO2 seems to have permeated the entire section, water movement has been more restricted. Oil‐filled inclusions in vein calcite have been found within dominant E‐W trending normal faults, suggesting that these may have facilitated oil migration. 相似文献
18.
A new method of Fourier Transform Infrared Spectroscopy (FTIR) is applied to the analysis of burned bones. FTIR analyses were undertaken to examine changes in Crystallinity Index (CI), Ca/P and C/C ratios in bone experimentally burned to known, but varying, temperatures and durations. Three sample groups were used to assess the new FTIR method. Blind tests were performed to assess the use of the CI for predicting burning conditions. The results suggested that the new method of FTIR was preferable to the traditional approach, but that CI is affected by factors other than temperature of burning, including the method of FTIR used, and that predictions of burning conditions in archaeological material may not extend beyond that of ‘high’ or ‘low’ intensity of burning. 相似文献
19.
Uni‐axial compaction creep experiments were performed on crushed limestone and analytical grade calcite powders at 150°C, a pore fluid pressure of 20 MPa, and effective axial stresses of 30 and 40 MPa. Previous experiments have shown that compaction under these conditions is dominated by intergranular pressure solution (IPS). The aim of the present tests was to determine the inter‐relationship between pore fluid chemistry, compaction rate and the rate‐controlling process of IPS. Intermittent flow‐through runs conducted using CaCO3 solution showed no effect on creep rate at low strains (<4–5%) but a major acceleration at high strains (5–10%). Measurements of the Ca concentration present in fluid samples revealed the build‐up of a high super‐saturation of CaCO3 during compaction under zero flow conditions, especially at high strains. Active flow‐through led to a drop in Ca concentration, which corresponded with creep acceleration. Addition of NaCl to the pore fluid, at a concentration of 0.5 m , increased the creep rate of the analytical grade calcite samples roughly in proportion to the enhancement of calcite solubility. Addition of Mg2+ and to the pore fluid, in concentrations of 0.05 and 0.001 m, respectively, caused major retardation of compaction creep. Integrating our mechanical, flow‐through and chemical data points strongly to diffusion‐controlled IPS being the dominant deformation mechanism in the calcite‐water system under closed‐system (zero flow) conditions at low strains (<4–5%), giving way to precipitation control at higher strains. Our fluid composition data suggest that this transition is because of accumulation of impurities in the pore fluid. As Mg2+ and phosphate ions are common in natural pore fluids, it is likely that retarded precipitation will be the rate‐limiting step of IPS in carbonates in nature. To quantify diagenetic compaction and porosity‐permeability reduction rates by IPS in carbonates needs to account for this. 相似文献
20.
The current interdisciplinary study of a funerary portrait has provided the first identification of a blue pigment on Palmyrene sculpture. The exceptional attestation of lapis lazuli on the examined portrait confirms the use of this highly valuable semiprecious stone in ancient polychromy, which was previously thought to be a later addition to the painter's palette. Considering that the archaeological record contains numerous minor objects carved from lapis lazuli, there are astonishingly few known instances of its use as a pigment. This Palmyrene discovery is only the third known example from Antiquity. 相似文献
