Genetic analysis of archaeological wood remains: first results and prospects

A total of 51 ancient oak wood samples originating from various European archaeological sites, dating from the Neolithic period to the 18th century, were assayed for the presence of reproducible chloroplast (cp) DNA sequences. Five polymorphic chloroplast fragments were targeted. Only five of the samples could be fully genetically characterised, revealing four different oak cpDNA haplotypes. In all cases, the haplotypes detected on ancient woods and the haplotypes characterised from fresh samples from the same localities matched. Overall, this congruence is consistent with a genetic continuity between ancient and modern European oaks, confirming the hypothesis that the mapped genetic patterns largely reflect the original structure that established during the post-glacial. This stability of the genetic structure implies that, in the future, the technique could be used to infer or confirm the transport of wood by man, providing interesting perspectives for the genetic analysis of ancient woods.     

Radiocarbon and dendrochronological dating of Sub-fossil oaks from Smarhoń riverine sediments

Sub-fossil oaks from Smarhoń in Belarus have been investigated and tree-ring chronologies were assembled. According to radiocarbon dating, the oldest oak grew from 5782–5612 cal BC and the youngest from 1575–1747 cal AD. Radiocarbon and dendrochronological dating of 97 samples, four single series, 10 mean curves (containing 2–9 series) and three chronologies (10–25 series) were constructed. The longest chronology (No. 16), covering 549 years, was absolutely dated against various oak chronologies of Polish/Baltic origin to AD 778–1326. Germination and dying-off phases were assessed from the three best replicated chronologies. A spectral analysis of the chronologies provided cycles of variable length, on average of 25 years.     

Oak decline in a southern Finnish forest as affected by a drought sequence

We investigated the decline of a pedunculate oak (Quercus robur L.) forest growing on shallow soil at the northern distributional limit of the species in southern Finland, using the dendroclimatic approach. About 200-year-old trees in three vigour classes — healthy, declining and dead — were sampled in 2008. Annual tree-ring, earlywood and latewood widths were measured and chronologies were established. The tree-ring data were correlated with monthly and seasonal climate data. Radial increment of oaks was positively related to the June and July precipitations. This was expressed especially in total ring width and latewood width, whereas the earlywood was more influenced by the warmer winter and spring. Furthermore, the correlation between the current year earlywood width and the preceding year latewood width was higher than between the earlywood and latewood of the same year. The analyses showed that the dead oaks and part of the declining oaks had ceased growing during 2005–2007 after a decadelong summer drought series. This indicates a time lag in the oak dieback. The radial growth of the declining and the dead oaks had dropped already since the 1990s, while the healthy oaks had better longterm growth and higher adaptive capacity to climate variation.     

On the origin of the tree Spondias mombin in Africa

This paper examines evidence for the origin of the tree Spondias mombin in Africa, where it is generally described as introduced from the Neotropics. Based on biogeographical, ecological, and historical evidence, this paper argues that the tree reached Africa via natural, long-distance dispersal, and should be considered an African native plant. The idea that it is introduced appeared in 1868, when it was a scientifically justifiable conclusion reflecting the limitations of nineteenth-century biogeographical knowledge. By the early twentieth century, representing Spondias mombin as a human introduction in Africa was no longer scientifically justifiable because of advances in knowledge of the African flora and plant dispersal ecology. Nonetheless, most authors continued to represent the tree as introduced, in part because such representation was consonant with dominant images of the African environment: (a) that the continent had suffered extensive deforestation in the recent past, and (b) that Africa's flora was depauperate in fruit trees prior to the coming of Europeans. Recent authors continue to describe Spondias mombin as introduced because they have not sufficiently considered the historic contexts of primary and secondary sources on Neotropical plant introductions in Africa. This paper concludes that the human role in creating the African portion of the trans-Atlantic tropical flora has been overemphasized. Natural plant dispersal across the Atlantic may be more frequent than generally accepted.     

Dendrochronological dating of wooden artifacts by measuring the tree rings using magnifying glass and photography-assisted method: an example of a Dutch panel painting

Dendrochronology, an analysis of tree rings, is a commonly used method for dating wooden structures in archaeological remains and historical objects. Fascinating subjects of examination are the historical oil paintings on oak panels. Here, we applied a tree ring analysis on three boards of a Dutch painting from the Sinebrychoff Art Museum (Helsinki). Tree rings were measured using the conventional lens-assisted method, in addition to the photography-based approach, where the widths of the rings were determined from digital enlargements of the photos. These two methods produced comparable tree ring series. The lens- and photography-based records of the measured panel exhibited higher agreement with each other than the conventional, lens-based, record against the different master chronologies. Dendrochronological cross-dating against the master chronology showed that the rings of the panel represent the period ad 1413–1620. Cross-dating was attained by comparing the tree ring series of the panel painting with the previously published chronologies obtained from timber transported from the historical ports of the Eastern Baltic Sea to Western Europe. Photography appears as a promising method to be used for dendrochronological investigations of archaeological and historical objects, alongside the conventional methods. We note that the importance of using photographs of tree ring cross sections was highlighted already in the 1930s. In the digital era, the photographic approach shows obvious benefits for archival purposes and remeasuring the rings, with additional future prospects of image processing and analyses.     

Dysentery in the crusader kingdom of Jerusalem: an ELISA analysis of two medieval latrines in the City of Acre (Israel)

Dysentery was a significant cause of ill health during medieval times according to written sources of the period. However, it has been very difficult to detect the organisms that cause dysentery in archaeological samples from latrines and cesspools. This is because the cysts of the enteric parasites that cause dysentery are very small and usually fragment in the soil, in contrast to the robust ova of parasitic intestinal worms. This study uses a monoclonal enzyme-linked immunosorbent assay (ELISA) technique to identify the fragments of those enteric parasites that cause diarrhoea. Samples were taken from two excavated medieval latrines in the city of Acre. Coins and radiocarbon dating suggest that the latrines were in use during the thirteenth century CE. Positive results were noted for Entamoeba histolytica and Giardia duodenalis, while Cryptosporidium parvum was negative. This is the first time that either of these parasites have been identified in the Middle East using these methods.     

Pollen-wood analysis at the Neapolis harbour site (1st–3rd century AD,southern Italy) and its archaeobotanical implications

Three Roman shipwrecks (Napoli A and Napoli C – 1st cent. AD; Napoli B – 2nd century AD) were recovered in the sandy-silt sediments representing the infilling of a protected inlet of Neapolis harbour (Naples, southern Italy). Extensive wood analysis suggests that a very attentive selection of species was made in shipbuilding, the choice of timber being related to wood technological properties and to the structural uses of the construction elements. Pollen data obtained from the coeval sedimentary layers revealed that all the timber taxa (apart from Picea/Larix) were present in the surroundings of the study area. The identified forest taxa are very common in the Mediterranean basin and thus the pollen-wood comparison was not able to define the location of the shipyards. Broad comparison with western Mediterranean wrecks evidenced the peculiarity of the Neapolis ships where the systematic use of both Juglans regia and Cupressus sempervirens was highlighted. Archaeological, biogeographical and archaeobotanical considerations suggest the local provenance of the ship C and constrain the possible origin area of both the ship Napoli A and Napoli B to central-southern Tyrrhenian coasts.     

First ancient bovine DNA evidence from India: difficult but not impossible

Ancient DNA isolation from the tropical countries has been shown to be very difficult in the past. Here for the first time we have been successful in isolating ancient DNA from Indian cattle samples. We were able to obtain DNA and sequence the partial mitochondrial D-loop in 3 of the 15 bovine fossil samples ranging in age from 2000 BC to 1000 AD, and were able to further identify the most recent sample as being of Bos indicus origin. Our results on ancient DNA extraction from India will encourage other researchers in this field to carry out further studies of ancient DNA from Indian bovine samples. Our results represent the first successful extraction and amplification of bovine ancient DNA from India, and thus may pave the road for a better understanding of demographic and historical processes of cattle domestication that has taken place in this region.     

Plant microfossil analysis reveals disturbed forest and a mixed-crop,dryland production system at Te Niu,Easter Island

Plant microfossil analysis was carried out on 12 soil samples from a variety of landscape features at three locations (100–250 m a.s.l.) along a 950 m transect at Te Niu, Easter Island. Pollen and phytolith assemblages were dominated by palms and ground ferns, and suggested disturbed forest. We identified pollen of bottle gourd (Lagenaria siceraria) and starch grains of the common yam (Dioscorea alata), sweet potato (Ipomoea batatas) and taro (Colocasia esculenta). The data suggest a mixed-crop, dryland production system at Te Niu dominated by yam and sweet potato, and supplemented by taro and bottle gourd. The data provide direct evidence of crop type and range, supporting the indirect evidence (topographic and landscape features, field and historical research, comparisons with elsewhere in the Pacific) that much of the rock covered landscape of Easter Island was used for intensive horticulture.     

Radiocarbon dating of prehistoric hearths in alpine northern Sweden: problems and possibilities

The chronology of prehistoric Sami settlement sites has previously been established by conventional radiocarbon dating of bulk charcoal samples associated with hearths from sunken hut floors (stállo-foundations). Here we present results of a comprehensive dating exercise of stállo-foundations in the alpine area of northern Scandinavia using Accelerator Mass Spectrometry (AMS) radiocarbon dating of charcoal. Over a 3 km² study area, AMS calibrated ages of hearth charcoal from 22 stállo-foundations across 12 sites securely date these features to between cal. AD 640 and AD 1180. Only small variations in age were found between charcoal samples from different areas of a given hearth. Statistical analysis of all the charcoal AMS radiocarbon dates obtained reveals that 12 stállo-foundations across nine sites are contemporaneous and date to the Viking Period (AD 800–AD 1050). The tightly constrained AMS-based chronology of stállo-foundations contrasts with the existing chronology based on conventional radiocarbon analysis, which places these features within a significantly greater time-frame of between AD 600 and AD 1900, with most dates ranging between AD 800 and AD 1350.This discrepancy is likely to result from the necessity of collecting composite hearth charcoal particles, which may originate from different phases of occupation, in order to achieve the required final carbon content for conventional radiocarbon analysis. We argue that the new AMS-based radiocarbon chronology of stállo-foundations presented here supersedes the existing chronology based on conventional (Gas Proportional counting) radiocarbon analysis and we advocate the use of AMS radiocarbon dating in future hearth investigations.     

First dendroarchaeological dates of prehistoric contexts in South America: chullpas in the Central Andes

Despite the existence of long-lived tree species with excellent tree-ring characteristics, the use of dendrochronological techniques for dating archaeological contexts has been very limited in South America. Recent research in the Bolivian Altiplano of the Central Andes has yielded a network of Polylepis tarapacana chronologies that goes back to the 13th century. This species was regularly used by local populations since pre-Columbian times as raw material for beams, lintels, hooks and other architectural features in houses, storage chambers, and sepulchers. The aim of this study is to argue in favor of the potential of P. tarapacana for providing high resolution dates of significant archaeological events during the pre-Columbian era. The chronology of chullpas (burial towers and storage chambers) in the southern Andean Altiplano is used as a case study. Growth rings from P. tarapacana have provided several centennial-length dendrochronological records including a reference regional chronology covering the last 786 years in the Central Andean highlands. Based on this long reference chronology calendar years were assigned to woody pieces from pre-Hispanic chullpas. Dendroarchaeological results are consistent with contextual evidence and most radiocarbon dates from woody samples and related archaeological items. Our results indicate that P. tarapacana has a high potential for providing annually-resolved tree-ring dates for archaeological contexts in the Altiplano since the early 13th century.     

Implications of a freshwater radiocarbon reservoir correction for the timing of late Holocene settlement of the Elk Hills,Kern County,California

Uncertainties regarding the magnitude of freshwater radiocarbon reservoir effects can introduce random errors into dates on archaeological freshwater carbonates. As a result, many archaeologists avoid dating freshwater shells unless no other datable materials are available. The chronology of prehistoric occupation of the former Naval Petroleum Reserve No. 1 (NPR-1) at Elk Hills, Kern County, has been established with 50 radiocarbon dates on freshwater mussels (Gonidea and Anodonta sp.). Characterization of any freshwater radiocarbon reservoir effect is crucial for the accurate interpretation of inferred settlement and subsistence changes on the Elk Hills. Paired charcoal and freshwater mussels sampled from closely associated contexts were dated to identify a freshwater reservoir effect. Paired Anodonta and Gonidea sp. shells were dated to investigate interspecific differences in fractionation. Results indicate that a 340 ± 20 ¹⁴C yr correction should be applied to conventional ¹⁴C dates on freshwater carbonates in the Buena Vista Basin before calendar calibration. Evidence of interspecific differences is inconclusive. Dates recalibrated with the reservoir correction indicate that widespread occupation of the Elk Hills is correlated with increasing precipitation towards the end of the Medieval Climatic Anomaly and during the Little Ice Age, suggesting that slough resource exploitation may have been driven by regional population pressure rather than drought-related declines in aquatic productivity.     

Revealed by Waves: A Stratigraphic,Palaeoecological, and Dendrochronological Investigation of a Prehistoric Oak Timber and Intertidal Peats,Bay of Ireland,West Mainland,Orkney

An oak timber was discovered in 2013 within intertidal peats at the Bay of Ireland, Stenness, Orkney, representing a unique archaeological find. Subsequent excavation and rescue of the timber took place in 2014 to investigate its stratigraphical relationship before further eroding. Dendrochronological and morphological study identified the timber as a possible radially split log, c. 150 years of age when felled. No dendrochronological match was possible, and a wiggle-match date obtained provided a Later Mesolithic felling date of 4410–4325 cal BC. This timber is the first and only evidence so far for the use of oak in Mesolithic Orkney. The timber is significant palaeoecologically, suggesting oak may have been indigenous to Orkney. This adds to a growing argument for the existence of areas of “true woodland”. Pollen evidence shows the timber was deposited within reedswamp, fringed by willow-birch carr-woodland, with oak unlikely to have been growing in the immediate location. High microscopic and macroscopic charcoal values indicate Later Mesolithic communities exerted influence on this wetland using burning as a tool for landscape modification. It is unknown what the timber represents; it may have been for construction purposes or as a marker/possible landing place showing the path to the Loch of Stenness.     

Changes in shell gathering in an early agricultural society at the head of Ise Bay,Japan

We examined changes in shell gathering in an early agricultural society at the head of Ise Bay, Japan based on the analysis of almost 20,000 individual shell remains from four coastal settlements. We analyzed historical changes in the composition and size range of the shell species Meretrix lusoria. The most common species went from Crassostrea gigas in the early Middle Yayoi period (about 400–350BC) to M. lusoria in the mid-Middle Yayoi period (about 320–200BC). It is possible that the seacoast tideland, an environment suitable for C. gigas, was buried in sediment from the rivers and thereby transformed into muddy sand bottoms, an environment more suitable for M. lusoria. We also analyzed historical changes in the size range of M. lusoria. The mean size of M. lusoria increased significantly from the early Final Jomon (about 1250–1000BC) to the late Early Yayoi (about 500–400BC), from the late Early Yayoi to the early Middle Yayoi, and from the early to the mid-Middle Yayoi periods. Evidence suggests that during the Yayoi period, the demand for shells decreased and therefore, the pressure to collect M. lusoria also decreased. We concluded that the larger specimens of M. lusoria were collected selectively.     

Ancient DNA analysis on Clonorchis sinensis eggs remained in samples from medieval Korean mummy

In the present study, Clonorchis sinensis (C. sinensis) ancient DNA (aDNA) was successfully extracted from human remains discovered in a tomb dating to the medieval Joseon dynasty of Korea. The presence of C. sinensis eggs was confirmed by microscopic observation, after which a PCR-based aDNA analysis was performed using primer sets designed for the amplification of nuclear ribosomal internal transcribed spacer 1 (ITS1), 2 (ITS2) and mitochondrial cytochrome c oxidase 1 (CO1) genes. The sequences obtained were 100% homologous to some contemporary C. sinensis gene sequences reported from Korea and other East Asian countries. We believe that the results of our analysis expand the temporal and geographical scopes of research on the history of C. sinensis infection in different human populations.     

Locally diagnostic phytoliths of wild rice (Zizania palustris L.) from Minnesota,USA: comparison to other wetland grasses and usefulness for archaeobotany and paleoecological reconstructions

Wild rice (Zizania spp.) is an important native grain of north-central North America, with spiritual and subsistence significance to many native peoples. Due to lack of suitable proxies, its past distribution and pattern of use are poorly known. This study demonstrates the diagnostic value of silica phytoliths from Z. palustris as a proxy tool to detect its past occurrence in a variety of paleoenvironmental and archaeological contexts. Our main findings are: 1) Dominant wetland grass species in Minnesota produce phytoliths distinct from Zizania phytoliths; 2) Closely related Leersia oryzoides produces a few Zizania-like phytolith morphotypes; however, these potential confusers can be identified based on 2-D and 3-D morphologies; 3) Z. palustris produces a wide variety of phytolith morphotypes, many of which are only found in certain parts of the plant (e.g., Inflorescence Type 1 from the spikelet); 4) Z. palustris produces 23 locally diagnostic phytolith morphotypes that can be used to determine the presence and abundance of wild rice in modern and paleo lake sediments; and 5) Wild rice phytolith Inflorescence Type 1 is the morphotype most likely to be observed in archaeological contexts, and may be unequivocally diagnostic for the genera Zizania.     

RADIOCARBON DATING ARCHAEOLOGICAL SAMPLES IN THE EASTERN MEDITERRANEAN, 1730 TO 1480 BC: FURTHER EXPLORING THE ATMOSPHERIC RADIOCARBON CALIBRATION RECORD AND THE ARCHAEOLOGICAL IMPLICATIONS*

The East Mediterranean Radiocarbon (Inter‐)Comparison Project (EMRCP) has measured time series of radiocarbon ages for known age samples of German oak (GeO) and for samples from the near‐absolutely placed Gordion juniper dendrochronology from central Anatolia. In this paper, we review the data for the calendar years from 1730 to 1480 bc , relevant in particular to controversy and debate concerning the absolute date of the Minoan eruption of the Santorini (Thera) volcano. We consider the issue of the radiocarbon (¹⁴C) dating of the Santorini eruption, and the problem of how this relates to the archaeological record and historical chronology of Egypt in light of the ¹⁴C data. We find that these ¹⁴C data, and other recent radiocarbon work, provide good grounds to be confident in the possibility of a robust radiocarbon‐based chronology for the eastern Mediterranean. In contrast, as the radiocarbon case becomes stronger, questions must be asked about some archaeological dating: in particular, at the site of Tell el‐Dab‘a in the Nile Delta of Egypt.     

First evidence of Equus asinus L. in the Chalcolithic disputes the Phoenicians as the first to introduce donkeys into the Iberian Peninsula

Two equid species have been documented in the Pleistocene of the Iberian Peninsula, the horse Equus caballus, and the Eurasian hemione Equus hydruntinus. While the former survived the Holocene–Pleistocene until now, the timing for the extinction of the latter is unclear. Scarce, fragmented archaeological remains assess the presence of small equids living in the Holocene of Iberia. Those could possibly correspond to the Eurasian hemione although unambiguous morphological identification is often not possible. With the find of an equid tooth from Leceia, a Chalcolithic fortified site in Portugal, and using both morphological and mitochondrial genome analyses, we demonstrate for the first time the presence of a new equid species in Holocene Iberia, namely a donkey (Equus asinus). Radiocarbon dating of the tooth to Cal 2340–2130, and 2080–2060 BC with 95% probability, demonstrates that donkeys were present in Iberia well before the arrival of Phoenicians in the first quarter of the first millennium BC (900–750 years BC), which were considered so far as the first who introduced donkeys in the region.     

Tree-ring chronologies for the 6th to 16th centuries for oaks of southern and eastern England

The background to the problem of providing useful oak chronologies for the variable environmental conditions that apply in southern and eastern England is outlined. The reference chronologies published here embrace three new principles. Firstly, the samples, nearly 300, on which they are based are almost entirely of boards or planks that are of radial section (from oaks aged on average about 250 years) that form part of panel paintings or chests. Secondly, to take account of the differences in the growth pattern with the vigour of growth, separate chronologies for sequences of different ring-width have been formed. Thirdly, on account of the difficulties in extending, with the samples available, an English chronology by the method of overlapping, eight separate chronologies, each about 300 years long, have been created. Matching has been based on German methods, i.e. computer comparisons (with more than one reference chronology) supported by visual comparison of charts. Agreement values in about half a million positions were calculated.These reference chronologies, expressed as ring-widths, are suitable for application to oaks that have grown within a region of considerable size that covers both sides of the North Sea. For panels used as a support for paintings of the 15th and 16th centuries, they have dated 85% of 130 English (London area) ones and about the same percentage of 25 Flemish ones. Rather earlier, sequences for oak boards used in places as far apart as York, Norwich, Oxford and Winchester have been matched. In the 10th to 12th centuries, the ring-width chronology derived for the London area shows good agreement with those for the hilly regions of Germany and that for Schleswig, as well as dating floor planks from Viking houses in York. A floating chronology, 322 years long, dataed to the 6th to 9th centuries by several radiocarbon analyses, has been formed from long sequences of rings from timbers excavated at Old Windsor and Portchester: this has matched material from Southampton and is linked with a mean curve for the well at North Elmham (Norfolk) and the strakes of the Graveney ship.