DNA FROM HUMAN ANCIENT BACTERIA: A NOVEL SOURCE OF GENETIC EVIDENCE FROM ARCHAEOLOGICAL DENTAL CALCULUS

We report a molecular methodology to obtain and analyse ancient bacterial DNA from archaeological dental calculus. Recent and archaeological DNA samples, as old as 4000 bp , were successfully extracted and amplified with species‐specific PCR primers. We propose this approach in order to: detect the presence of specific bacterial species infecting past human populations; compare the composition of ancient oral microbiomes among human populations; and analyse the genetic variability and covariation of bacteria and human host populations. Genomic analysis of bacteria from dental calculus is a promising source of evidence for palaeopathological and micro‐evolutionary studies, focused either on micro‐organisms or their human hosts.     

Dirty teeth and ancient trade: Evidence of cotton fibres in human dental calculus from Late Woodland,Ohio

Analysis of ancient human dental calculus for the presence of inclusions related to diet and dental health has been overlooked in anthropological literature. Small particles of archaeobotanical debris, which would otherwise not be preserved in the archaeological record, can become incorporated into unmineralised plaque on teeth during mastication and oral manipulation. When plaque mineralises into calculus, debris is preserved in situ. Samples of dental calculus (n = 18) were collected from the Danbury site (33OT16) in Ottawa County, Ohio and viewed under a scanning electron microscope for inclusions. Analysis yielded a variety of noticeable inclusions, including mineralised bacteria, calcium‐phosphate crystalline structures and numerous phytoliths. Here we report the first evidence of fibres consistent with cotton (Gossypium spp.) embedded in the dental calculus from the Late Woodland component (900–1100 AD ) of the Danbury site. Prehistoric cotton has not been previously documented in Ohio. The distinct morphology of the Danbury cotton and its presence in the Late Woodland component at Danbury suggests long‐distance interaction at a time in Ohio when movement of exotic goods appeared to have diminished. These microscopic remains provide insight into paleoethnobotanical history of ancient Ohioans and attest to how analysis of dental calculus could be used to supplement other paleodietary and archaeological analyses. Copyright © 2010 John Wiley & Sons, Ltd.     

Starch granules,dental calculus and new perspectives on ancient diet

Recent work in various parts of the world has suggested the possibility of ancient starch granules surviving and adhering to archaeological artefacts. Often this information is used to infer aspects of diet. One additional source for recovery of archaeological starch granules is dental calculus. The presence of plant food debris in dental calculus is well known but has not been not widely investigated using archaeological material. The extraction of starch granules from dental calculus represents a direct link to the consumption of starchy food by humans or animals. Using dental calculus also sidesteps many other questions still inherent in using starch granules to reconstruct aspects of ancient diet, such as the effects of diagenesis on their morphology; as the starches are trapped inside a concreted matrix they are less likely to alter over time. We used amylase digestion by a starch-specific enzyme to confirm the material as starch.     

基于人牙结石的淀粉粒证据探讨裴李岗遗址先民植物性食物来源

人牙结石淀粉粒分析是开展古代居民食物来源研究的有效途径之一。用此方法对河南新郑裴李岗遗址仅存的两具裴李岗文化人骨牙齿上的结石开展了淀粉粒分析,成功提取出38颗淀粉粒,其中可鉴定种属的淀粉粒主要来自于栎属、豆科和块茎类等非农作物,少量有可能来自于粟黍类作物。虽然分析样品较少,提取出的淀粉粒数量不多,但这一结果或许表明采集植物有可能构成了裴李岗遗址居民植物性食物的主体。结合贾湖、莪沟、石固和寨根等裴李岗文化遗址的植物考古学研究,裴李岗文化居民的食物结构具有广谱性特征。本研究为全面认识中原地区裴李岗文化居民食物构成和聚落生业经济,深入探讨中原地区早期农业形成过程等提供了新思路和新证据。     

Dental wash: a problematic method for extracting microfossils from teeth

A variety of microfossils, originating from plant foods, become trapped in the dental calculus matrix. Processing of dental calculus allows extraction of these microfossils. The resulting data can be used to reconstruct diet at the individual and population levels as the identification of microfossils like starch grains and phytoliths to the generic level, and sometimes to the species level, is possible. However, in some archaeological sites, dental calculus deposits do not preserve well enough to be processed. To prevent the loss of information in such cases, we present a technique, called “dental wash”. It permits extracting microfossils from cryptic dental calculus deposits. In the two experimental archaeological cases presented herein we identified phytoliths, starch grains as well as a diatom fragment with this method, whereas in a control sample no microfossils were found. Moderate damage to the teeth was detected when they were already friable due to poor preservation. Minor damage to the surface of well-preserved teeth was observed. This indicates that the proposed method is efficient in recovering microfossils, but unacceptable because of damage to teeth. If the method can be refined, it will expand the potential of dental calculus analysis to a greater range of archeological sites.     

An Investigation Into the Relationship Between Funerary Treatment and Bacterial Bioerosion in European Archaeological Human Bone

A central problem in funerary archaeology is interpreting how the corpse was manipulated in the immediate post mortem period. The extent of bacterial bioerosion to the internal bone microstructure has been proposed as a means to infer the early post mortem history of a corpse, as it has been suggested that this form of bone diagenesis is produced by an organism's putrefactive gut bacteria. Under this model, different forms of funerary treatment would be expected to leave characteristic signatures of bioerosion in archaeological bone. Here, we tested the extent to which bacterial bioerosion of ancient human bones reflected funerary treatment, through histological analysis of 301 archaeological human bone thin sections from 25 European archaeological sites. We found that bioerosion was significantly influenced by whether a bone originated from a neonatal individual or an anoxic context. When these remains were excluded, bioerosion was controlled by archaeological phase in a manner consistent with known early post mortem treatment and forensic models of bodily decomposition. These findings suggest that microscopic analyses of bone have useful applications in reconstructions of funerary processes and provide some insight into factors that may control the persistence of organic biomolecules and fossilization.     

Burning damage and small-mammal human consumption in Quebrada del Real 1 (Cordoba, Argentina): an experimental approach

The zooarchaeological study of small-vertebrate consumption requires a taphonomical approach to differentiate animal bones that were incidentally incorporated from those that were intentionally exploited in the past human subsistence. In order to make this distinction, the relationship between archaeological small-rodent burned bones and prehistoric human behavior was explored using an experimental cooking study as a modern analogue. During the cooking experiment the entire carcasses of three guinea pigs (Cavia porcellus) and two yellow-toothed cavies (Galea leucoblephara) were placed in the coals of an open fire that simulate a real campfire, rotating their positions until the meat was completely cooked. Subsequently, the intensity of burning damage and the loss of skeletal elements were analyzed at macroscopical levels. The data was used to identify cooking evidence in the Ctenomyidae and Caviidae rodent bones recovered from Quebrada del Real 1 (ca. 6000-300 BP, Córdoba, Argentina). Remarkable similarities between the archaeological and analogical records were found, including the distinctive burning pattern on the distal extremities of the unmeaty long bones (e.g, radii and tibiae), the high frequency of broken incisor teeth and the loss of autopodium elements. Based on these comparative results, it is suggested that the small-rodent assemblages of QR1 were primary accumulated by humans though butchery, cooking and consumption related activities. Extending this study to other archaeological sites in South America may help to identify the prehistoric bone collectors of these small-animals.     

云南剑川海门口遗址饱水古木降解的微观构造分析

文中采用扫描电镜(SEM)和透射电镜(TEM)对海门口遗址饱水古木进行降解机理分析。结果表明:古木细胞次生壁收缩严重并与胞间层分离;胞间层保存较完好,呈连续网状。说明古木纤维素和半纤维素降解相对严重,木质素降解相对较轻。古木主要是受细菌降解,通过SEM和TEM均可见明显的细菌腐朽特征。细菌首先侵入细胞腔,再通过S3层侵入细胞壁内部。细胞壁内由于降解而产生的空隙在几十到几百纳米之间。饱水古木也受到了一定程度的真菌降解,但这类真菌主要降解古木内淀粉等物质,对细胞壁物质降解能力差,主要是使古木变色。     

Biofilm growth in human skeletal material from ancient Mesopotamia

Investigators have long recognised the effects of microbial activity on archaeological bone. These investigators, however, have focused on single or groups of microbes rather than on complex microbial aggregates such as biofilms, a focus that has affected our understanding of archaeological bone biodeterioration. In this paper, we report on the investigation of a biofilm in archaeological human bone from the site of Tell Leilan, Syria (2900–1900 BCE). Scanning electron microscopy indicated that the biofilm is characterised by single cells and microcolonies of bacteria and fungi, as well as calcite crystals that were all embedded within extracellular polymeric substances. Using culture techniques and DNA sequencing, we isolated and identified several microbes from the biofilm including Amycolatopsis sp., Penicillium chrysogenum, Aspergillus sp., Chaetomium sp., and Cladosporium sp. Having characterised the Leilan biofilm, we are now closer to understanding the complex process of bone biodeterioration in archaeological bone collections.     

出土饱水云南松的超微构造特征

对云南剑川县出土的木质文物进行了研究,从超微结构层面更深入地解析了饱水古木的降解情况。出土的云南松(Pinus yunnansis)古木在饱水环境中淹埋了4 000多年。降解主要发生在晚材管胞,而且降解在晚材部分并不均匀:一些未降解的完好管胞分布在降解严重的管胞中。透射电镜观察显示:降解从S1/S2和S2/S3的界面开始;对于一些降解较严重的管胞,到腐朽后期细胞次生壁全部发生降解,只留下复合胞间层;细菌侵蚀是云南松饱水古木降解的主要原因。固体核磁共振结果表明:纤维素和半纤维素降解严重,木质素也出现了一定程度的降解。本研究可为其后续的加固保护提供科学的参考依据。     

Human impact and landscape utilization from the Mesolithic to medieval time traced by high spatial resolution pollen analysis and numerical methods

Pollen analysis in relation to archaeological excavations has been carried out by the coast of central Norway to investigate for the first time long-term human impact on the vegetation in this region. A total of 297 samples from eleven archaeological sites and connected bogs/peat profiles reveal the vegetation development from the Mesolithic until today. Principal Component Analysis (PCA) is used to identify and elucidate the development through time and space, and the results of pollen diagrams from bogs are compared to the results of on-site pollen data. Human impact has transformed the vegetation to a varying degree in different time periods. A dense population connected to the shoreline is slightly visible as opening-up of the forest in the Mesolithic, whereas re-use of Mesolithic settlement sites for cultivation and grazing in the Late Neolithic and Early Bronze Age (from c. 2300 cal BC) is clearly documented by palaeobotany but weakly recorded in the archaeological record. Areas for settlement and cultivation are found from the Late Bronze and Iron Ages and pollen analysis contributes to a detailed picture of utilization of the landscape. The investigation shows the potential of combining archaeological and botanical data and analysing several small pollen sequences within an excavation area to reveal spatial patterns in vegetation development and human impact through time.     

Where are the witches of prehistory?

Why are certain common classes of ritually destroyed objects (persons, artifacts, or architecture), such as persecuted witches, so difficult to identify in the archaeological record? Although a common topic in cultural anthropology, witches seldom receive the attention of archaeologists. The difficulties archaeologists face in the study of religion derive, in part, from the lack of correlates linking ritual activities to the formation of archaeological deposits. This paper defines ritual as a technology and employs an object life history approach that draws upon ethnographic, archaeological, and experimental research to begin building such linkages—including those describing the presecution and deposition of witches, sorcerers, and other victims of ritual violence. These new directions are illustrated through a case study of anomalous deposits of human skeletal remains from the North American Southwest     

Evaluating microfossil content of dental calculus from Brazilian sambaquis

To date, limited numbers of dental calculus samples have been analyzed by researchers in diverse parts of the world. The combined analyses of these have provided some general guidelines for the analysis of calculus that is non-destructive to archaeological teeth. There is still a need for a quantitative study of large numbers of calculus samples to establish protocols, assess the level of contamination, evaluate the quantity of microfossils in dental calculus, and to compare analysis results with the literature concerning the biology of calculus formation. We analyzed dental calculus from 53 teeth from four Brazilian sambaquis. Sambaquis are the shell-mounds that were established prehistorically along the Brazilian coast. The analysis of sambaqui dental calculi shows that there are relatively high concentrations of microfossils (phytoliths and starch), mineral fragments, and charcoal in dental calculus. Mineral fragments and charcoal are possibly contaminants. The largest dental calculi have the lowest concentrations of microfossils. Biologically, this is explained by individual variation in calculus formation between people. Importantly, starch is ubiquitous in dental calculus. The starch and phytoliths show that certainly Dioscorea (yam) and Araucaria angustifolia (Paraná pine) were eaten by sambaqui people. Araceae (arum family), Ipomoea batatas (sweet potato) and Zea mays (maize) were probably in their diet.     

Identification of the first reported Lapita cremation in the Pacific Islands using archaeological,forensic and contemporary burning evidence

Burnt human remains excavated from a scoop feature from a cemetery at Teouma, Vanuatu in the western Pacific (∼2850 BP) were examined to assess the nature of the deposit. Possible scenarios explaining the reason the bone was burnt and interred were assessed using osteological signatures taken from archaeological, experimental, and forensic studies. The methodology of the study included recording color change, types of bone distortion, and element representation in conjunction with archaeological evidence. The burnt and fragmented human bone (n = 430, fragments weighing 620 g) represents a single adult individual. Macroscopic evidence from the bone indicates the body had been fleshed or fresh at the time of burning and element representation follows a similar pattern to other burials excavated from the site. Excluding burning, there was no evidence of human modification to the bone such as cut marks, percussion pits or peri mortem trauma suggestive of cannibalism. The archaeological evidence from the site indicates that the body had not been burnt in the place the remains were subsequently discovered. The combined macroscopic and archaeological evidence strongly suggests that the human bone was burnt as a result of a deliberate cremation of an individual. If a conclusion of deliberate cremation is accepted, this research represents the first case of a Lapita period cremation and demonstrates how a combination of methods can explain the nature of an archaeological deposit of burnt human bone when the cause is not otherwise apparent.     

Demography and the Palaeolithic Archaeological Record

Demographic change has recently re-emerged as a key explanation for socio-cultural changes documented in the prehistoric archaeological record. While the majority of studies of Pleistocene demography have been conducted by geneticists, the archaeological records of the Palaeolithic should not be ignored as a source of data on past population trends. This paper forms both a comprehensive synthesis and the first critical review of current archaeological research into Palaeolithic demography. Within prevailing archaeological frameworks of dual inheritance theory and human behavioural ecology, I review the ways in which demographic change has been used as an explanatory concept within Palaeolithic archaeology. I identify and discuss three main research areas which have benefitted from a demographic approach to socio-cultural change: (1) technological stasis in the Lower Palaeolithic, (2) the Neanderthal-Homo sapiens transition in Europe and (3) the emergence of behavioural modernity. I then address the ways in which palaeodemographic methods have been applied to Palaeolithic datasets, considering both general methodological concerns and the challenges specific to this time period. Finally, I discuss the ability of ethnographic analogy to aid research into Palaeolithic demography.     

Strontium isotope analysis of Neolithic and Copper Age populations on the Great Hungarian Plain

The strontium isotope ratio (⁸⁷Sr/⁸⁶Sr) is used in archaeological studies to identify major events of population movement in prehistory such as migration, conquest, and inter-marriage. This study shows that the strontium isotope method can be expanded to identify more subtle shifts in prehistoric human mobility. ⁸⁷Sr/⁸⁶Sr isotope ratios were analyzed in dental enamel from human and faunal specimens from the Late Neolithic and Copper Age on the Great Hungarian Plain. The archaeological record indicates that several aspects of life changed during the transition from the Late Neolithic to the Copper Age (ca. 4500 BC) in Hungary; evidence for increased interaction over a wide geographical area, less resource pooling and the use of secondary products has been used to support the idea that local populations became more mobile, perhaps due to the adoption of an agro-pastoral economy. Results from this study identify a change in the range of strontium isotope values from the Late Neolithic to the Copper Age from a very narrow range of values to a much broader range of values, which suggests that changes in how land and resources were utilized on the Great Hungarian Plain affected incorporation of strontium into the skeletal system. This study indicates that the strontium isotope ratio is a valuable tool for identifying more subtle changes in prehistoric behavior such as a shift to a more pastoral economy.     

Reconstruction of local environments of ancient population in a changeable river valley landscape (The Middle Vychegda River,Northern Russia)

In river valleys, both human occupation and subsequent preservation of archaeological sites are affected by active landscape transformation caused by river lateral migration, incision/aggradation cycles and changes of river hydrological regime. In the middle Vychegda River valley (Northern Russia), there are numerous traces of human presence since the Mesolithic. We exploit multi-disciplinary archaeological, geomorphological and geochronological approach to elucidate the environmental preferences of settlements positioning during different epochs of the Holocene. High resolution space image supplemented with data on alluvial stratigraphy derived from bank exposures and hand cores, as well as 51 radiocarbon dates were used to make the geomorphic map showing ages of floodplain/terrace segments and palaeochannels. Using this map together with sediment facial interpretation, position of archaeological sites was analysed in the context of local geomorphic and hydrologic situation. The majority of archaeological sites and modern settlements are found on terraces at river banks or at oxbow lakes which were well connected to the river. Few exceptions from this rule may be explained by seasonal character of dwelling functioning, ritual burial practice or specialization of settlements. Geomorphic situation was used as a background for planning further prospection of different-age archaeological objects.     

Anthropogenic units fingerprinted by REE in archaeological stratigraphy: Mas d'Is (Spain) case

On occasions, archaeologists have to deal with serious difficulties to differentiate between processes that ultimately are responsible for the formation of stratigraphic units.Sometimes we face problems related with depositional units in multilayered deposits and other times, we ask for the character of some dark surface soils, very similar to natural paleosols and usually associated with archaeological findings. In both cases, the problems we must address concern the relative impact of human activities.The imbalance between anthropic and natural processes in the formation of archaeological deposits is crucial for a correct interpretation of the processes involved in the formation of archaeological sites, but also of their occupation-abandonment dynamics and the understanding of their spatial behaviors and relationship with the environment.In this paper we propose a new methodological approach for the identification of anthropogenic fingerprints in stratigraphic units through Rare Earth Elements (REE) soil analysis. The role of REE for the effective identification of sediment provenance due to their coherent behavior during weathering, erosion and fluvial transportation and their high resistance to chemical mobilization is well known in other areas of knowledge. We try to explore its potentiality in a challenging archaeological context. Our purpose was to identify human traces in stratigraphic units where archaeological materials are scarce or absent intertwined with others richer in archaeological remains by the determination of multiple elements and statistical studies. We believe that Rare Earth Elements (REE) soil analysis provides unique insights for a better characterization of natural and archaeological sediments but more importantly to recognize different stages of the gradient. We expect to discern between natural versus anthropic units and between primary versus secondary deposits (redeposition), using the case of the Neolithic site of Mas d'Is (Alicante, Spain) as an example. The application of the Principal Component Analysis (PCA) remarks differences in REE values, those analysis show differences between units of undoubtedly anthropogenic origin and control samples taken from natural sediments –including marls bedrock–, in their vicinity, but also we could notice finer nuances like the degree of human contributions to paleosols formation.     

Inferring Human Behaviors from Isotopic Analyses of Rat Diet: a Critical Review and Historical Application

Rat (Rattus spp.) bone collagen stable isotope values are often assumed to reflect an average of food stuffs that were available to archaeological populations. This paper considers the feasibility of using stable isotope evidence from rat remains as a source of proxy information for human food-related social, economic, and sensorial behaviors. First, a literature review of archaeological and modern ecological rat isotope work reveals that, while rat dietary signatures are often a reasonable proxy for human food waste, they will not always record an unbiased average of foods which are available in a given environment. Second, an overview of ethological, biological, and environmental factors that can influence rat diets is given from the perspective of archaeological bone chemistry, to help identify factors that require explicit and critical consideration when rat stable isotope data is taken as a proxy for human food-related behaviors. Finally, rat stable isotope values are considered to provide new evidence about the social and economic responses of an important historical English fishing community at Ferryland (CgAf-02) to conflict and political turmoil at the turn of the eighteenth century. These results also highlight how information on rat diets can provide a counterpoint to other common faunal isotope approaches that focus on dogs and pigs as a proxy for human dietary behaviors.